PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000242656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 319aa    MW: 35941.2 Da    PI: 5.2232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000242656genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.64.4e-35610629129
            NAM  29 eleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                    +  ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t++gyWkatg+d++vl  +ge+ g  ktL+f++grapkge+tdWv
  MDP0000242656   6 PY-NFVAEVDIHKYAPWDLPeKsSWQSGDLKWYFFCPTERKYPTGARAKRTTERGYWKATGNDRSVLY-NGEVAGKIKTLIFHTGRAPKGERTDWV 99 
                    45.6799************95345666778**************************************.999************************ PP

            NAM 123 mheyrle 129
                    mheyrle
  MDP0000242656 100 MHEYRLE 106
                    *****85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.571128IPR003441NAC domain
SuperFamilySSF1019416.93E-442128IPR003441NAC domain
PfamPF023651.8E-1224105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGKRLPYNFV AEVDIHKYAP WDLPEKSSWQ SGDLKWYFFC PTERKYPTGA RAKRTTERGY  60
WKATGNDRSV LYNGEVAGKI KTLIFHTGRA PKGERTDWVM HEYRLESKDL ANRGVPQESY  120
VLCTIFQKEG PGPKNGAQYG APLMEEDWSD DEAENCSEAV XHANMPEPNL VLPSNYNIPS  180
LLARIPXKVY TYVLHLNRAY QMXYHFLAMF PNWFPELGNV VPIGNASATP HVVSNDIYVT  240
LGDLGKVARV GEDGCSFSSL PNSVCATGQM PRGDDGQYLE LDDLGELFNY XDSTHTRPPS  300
MFGEPQTLLG EMPFQGETX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-33813447171NO APICAL MERISTEM PROTEIN
1ut4_B1e-33813447171NO APICAL MERISTEM PROTEIN
1ut7_A1e-33813447171NO APICAL MERISTEM PROTEIN
1ut7_B1e-33813447171NO APICAL MERISTEM PROTEIN
3swm_A1e-33813450174NAC domain-containing protein 19
3swm_B1e-33813450174NAC domain-containing protein 19
3swm_C1e-33813450174NAC domain-containing protein 19
3swm_D1e-33813450174NAC domain-containing protein 19
3swp_A1e-33813450174NAC domain-containing protein 19
3swp_B1e-33813450174NAC domain-containing protein 19
3swp_C1e-33813450174NAC domain-containing protein 19
3swp_D1e-33813450174NAC domain-containing protein 19
4dul_A1e-33813447171NAC domain-containing protein 19
4dul_B1e-33813447171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348770.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9FY823e-68NAC82_ARATH; NAC domain-containing protein 82
TrEMBLD9ZJ991e-168D9ZJ99_MALDO; NAC domain class transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.16e-71NAC domain containing protein 103